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NGS HEME BIOINFORMATICS - NGSB3
NGSB3
Analytes/procedures in bold type are regulated for proficiency testing by the Centers for Medicare & Medicaid Services (CMS).

Analyte/Procedure Challenges per Shipment Number of Activities
Illumina TruSight Myeloid Sequencing Panel 1 Two online activities per year
Thermo Fisher Oncomine Myeloid Assay 1

Additional Information

  • This in silico bioinformatics program is designed to complement and augment somatic variant wet bench NGS proficiency testing programs by testing a greater diversity of variants at a greater range of variant allele fractions.
  • Laboratories will be asked to identify somatic single nucleotide variants and small insertions/deletions/indels in some of these genes: ABL1, ASXL1, BCOR, BRAF, CALR, CBL, CEBPA, DNMT3A, ETV6, FLT3, GATA2, IDH1, IDH2, JAK2, KIT, KRAS, MYD88, NPM1, NRAS, PTPN11, SETBP1, SF3B1, STAG2, TET2, TP53, U2AF1, WT1, ZRSR2.
  • This program includes variants present with a variant allele fraction (VAF) potentially as low as 5%.

Program Information

  • Sequencing files containing somatic variants to be downloaded and incorporated into your laboratory bioinformatics pipeline for analysis and reporting; file sizes range from 100MB to 1GB
  • The BAM and/or FASTQ files are platform‑specific and cannot be used with other instruments/software.
  • Your CAP shipping contact will be notified via email when the activity is available

Shipping Schedule

  • Shipment A: March 21
  • Shipment B: September 19






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